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Simon Sherman, PhD
Selected Publications (from more than 100 articles):
Singh, J., Khan, G., Kinarsky, L., Cheng, H., Wilken, J., Choi,
K., Bedows, E., Sherman, S., Cheng, P.W. (2004) Identification
of disulfide bonds among the nine core 2 N-acetylglucosaminyltransferase-M
cysteines conserved in mucin beta 6 N-acetylglucosaminyltransferase
family. J. Biol. Chem., 279, 38969-38977.
Suryanarayanan G., Keifer
P.A., Wang G., Kinarsky L., Hollingsworth M.A., and Sherman S.
(2004) NMR-based structural studies of the glycosylated MUC1 tandem
repeat peptide. Int. J. Mol. Sci. 5, 84-92.
Rubinstein A., Kinarsky L., and Sherman S. (2004) Molecular Dynamics
Simulations of the O-glycosylated 21-residue MUC1 Peptide. Int.
J. Mol. Sci. 5, 119-128.
Rubinstein A. and Sherman S. (2004) Influence
of the Solvent Structure on the Electrostatic Interactions in Proteins.
Biophys J., 87, 1544-1557.
Pisarev VM, Kinarsky L, Caffrey T, Hanisch
FG, Sanderson S, Hollingsworth MA, Sherman S. (2005) T cells recognize
PD(N/T)R motif common in a variable number of tandem repeat and
degenerate repeat sequences of MUC1. Int Immunopharmacol. 5, 315-330.
Shen Y, Iqbal J, Xiao L, Lynch RC, Rosenwald A, Staudt LM, Sherman
S, Dybkaer K, Zhou G, Eudy JD, Delabie J, McKeithan TW, Chan WC.
(2004) Distinct gene expression profiles in different B-cell compartments
in human peripheral lymphoid organs. BMC Immunol., 5, 20.
Dybkaer
K, Zhou G, Iqbal J, Kelly D, Xiao L, Sherman S, d'Amore F, Chan
WC. (2004) Suitability of stratagene reference RNA for analysis
of lymphoid tissues. Biotechniques, 37, 470-472, 474.
Iqbal J, Sanger
WG, Horsman DE, Rosenwald A, Pickering DL, Dave B, Dave S, Xiao
L, Cao K, Zhu Q, Sherman S, Hans CP, Weisenburger DD, Greiner TC,
Gascoyne RD, Ott G, Muller-Hermelink HK, Delabie J, Braziel RM,
Jaffe ES, Campo E, Lynch JC, Connors JM, Vose JM, Armitage JO,
Grogan TM, Staudt LM, Chan WC. (2004) BCL2 translocation defines
a unique tumor subset within the germinal center B-cell-like diffuse
large B-cell lymphoma. Am J Pathol., 165, 159-166.
Balaji, K.C.,
Rao, P.S., Smith, D.J., Louis, S., Smith, L.M., Sherman, S., Bacich,
D., and O’Keefe, D. (2004) Microarray analysis
of differential gene expression in androgen independent prostate
cancer using a metastatic human prostate cancer cell line model.
Urol Oncol, 22(4): 313-20.
Pisarev, V., Yu, B., Salup, R., Sherman, S., Altieri, D. Gabrilovich,
D. Full-length dominant negative survivin for cancer immunotherapy.
Clinical Cancer Research, 9: 6523-6533, 2003.
Kirnarsky, L., Suryanarayanan, G., Prakash O., Paulsen H., Clausen
H., Hanisch F.G., Hollingsworth, M.A., and Sherman, S. Conformational
studies on the MUC1 tandem repeat glycopeptides: implication for
the enzymatic O-glycosylation of the mucin protein core. Glycobiology,
13(No.10): 1-11,2003.
Bedows, E., Darling R.J., Wilken J.A., and Sherman S. Intracellular
folding and assembly of human chorionic gonadotropin: a model for
cystine knot growth factor synthesis. Indian J. Exp. Biol., 40
(No.4): 467-485, 2002.
Rubinstein, A., Kinarsky, L. and Sherman, S. Molecular Dynamics
Simulations of the O-glycosylated 15-residue MUC1 Peptide. Presented
at the Eighth Electronic Computational Chemistry Conference (ECCC-8),
March 4- April 1, 2002.
Rubinstein, A., Shats, O., and Sherman, S Role of the local interactions
in intrinsic conformational and structural propensities of amino
acid residues in proteins. Presented at the Seventh Electronic
Computational Chemistry Conference (ECCC-7), April 2-30, 2001.
Sherman, S., Kinarsky, L. and Rubinstein, A. Conformational Studies
of O-Glycosylated 15-Residue Peptide from the Human Mucin (MUC1)
Protein Core. In: Peptides: The Wave of the Future. Proceedings
of the Second International and the 17th American Peptide Symposium.
(Michael Lebl and Richard A. Houghten, Editors) American Peptide
Society, 381-382, 2001
Rubinstein, A. and Sherman, S. The Influence of the Surrounding
Media on the Structural Propensities of Amino Acid Residues in
Proteins. In: Peptides: The Wave of the Future. Proceedings of
the Second International and the 17th American Peptide Symposium.
(Michael Lebl and Richard A. Houghten, Editors) American Peptide
Society, 332-333, 2001.
Vogen, S. M., Packzkowski, N. J., Kinarsky, L., Short, A., Whitmore
J.B., Sherman, S. A., Taylor, S.M., and Sanderson, S.D. Differential
activities of decapeptide agonists of human C5a: the conformational
effects of backbone N-methilation. International Immunopharmacology,
1: 2151-2162, 2001.
Sun, Q., Kinarsky, L., Sherman, S., and Gladyshev, V.N. Selenoprotein
oxidoreductase with specificity for thioredoxin and glutathione
systems. PNAS, 98: 3673-3678, 2001.
Darling, R.J., Wilken, J.A., Miller-Lindholn, A.K., Urlacher,
T.M., Ruddon, R.W., Sherman, S., and Bedows, E. Functional contributions
of noncysteine residues with the cysteine knots of human chorionic
gonadotropin subunits. J. Biol. Chem., 276: 10692-10699, 2001.
Taylor, S.M., Sherman, S., Kinarsky, L., and Sanderson, S.D. Development
of response-selective agonists of human C5a anaphylatoxin: conformational,
biological, and therapeutic considerations. Current Medicinal Chemistry.
8: 867-684, 2001.
Darling, R.J., Wilken, J.A., Miller-Lindholn, A.K., Urlacher,
T.M., Ruddon, R.W., Sherman, S., and Bedows, E. (2001) Functional
contributions of noncysteine residues with the cysteine knots of
human chorionic gonadotropin subunits. J. Biol. Chem., 276: 10692-10699.
Taylor, S.M., Sherman, S., Kinarsky, L., and Sanderson, S.D. (2001)
Development of response-selective agonists of human C5a anaphylatoxin:
conformational, biological, and therapeutic considerations. Current
Medicinal Chemistry. 8: 867-684.
Gangani, R.A., Silva, D., Sherman, S.A., Perini, F., Bedows, E.
and Keiderling, T.A. (2000) Folding studies on the human chorionic
gonadotropin _-subunit using optical spectroscopy of peptide fragments.
J. Am. Chem. Soc., 122: 8623-8630.
Kirnarsky, L., Prakash, O., Vogen, S.M., Nomoto, M., Hollingsworth,
M.A., and Sherman, S. (2000) Structural effects of O-glycosylation
on a 15-residue peptide from the mucin (MUC1) core protein. Biochemistry,
39:12076-12082.
Shats, O., Vaisman, I., Shats, A., and Sherman, S. (1999) SECOST:
sequence-conformation-structure database for amino acid residues
in proteins. Bioinformatics, 15, 525-526.
Silva, R.A.G.D., Sherman, S.A., and Keiderling, T.A. (1999) _-hairpin
stabilization in a 28-residue peptide derived from the _ -subunit
of human chorionic ganodotropin hormone. Biopolymers, 50, 413-423.
Vogen, S.M.; Prakash, O., Kirnarsky, L., Sanderson, S.D., and
Sherman, S.A. (1999) Determination of structural elements related
to the biological activities of potent decapeptide agonists of
human C5a anaphylatoxin. J. Peptide Res. 53, 74-84.
Kirnarsky, L., Nomoto, M., Ikematsu, Y., Hassan, H., Bennett,
E.P., Cerny, R.L., Clausen, H., Hollingsworth, M.A., Sherman, S.,
(1998) Structural analysis of peptide substrates for mucin-type
O-glycosylation. Biochemistry, 37, 12811-12817.
Gololobov, G., Noda, Y., Sherman, S., Rubinstein, I., Baranowska-
Kortylewicz, J., and Paul, S. (1998) Stabilization of Vasoactive
Intestinal Peptide by Lipids. The Journal of Pharmacology and Experimental
Therapeutics, 285, 2, 753-758.
Sherman, S., Sclove, S.L., Shats, O., and Kirnarsky, L. (1998)
Dihedral Probability Cluster Monte Carlo Procedure for Conformational
Analysis of Proteins. Internet J. Chem., 1, 22, URL: http://www.ijc.com/articles/1998v1/22/.
Kirnarsky, L., Vogen, S.M., Sanderson, S.D., Shats, O., and Sherman,
S. (1998) Computer-aided molecular design of a new generation of
the C5a agonists and antagonists. Internet J. Chem., 1, 20, URL:
http://www.ijc.com/articles/1998v1/20/.
Vogen, S.M., Prakash, O., Kirnarsky, L., Sanderson, S.D., and
Sherman, S. (1998) NMR Analysis of a Potent Decapeptide Agonist
of Human C5a Anaphylatoxin. J. Peptide Res., 51: 226-234
Kirnarsky, L., Shats, O., and Sherman, S. (1997) Improving the
efficiency of protein structure determination from NMR. Journal
of Molecular Structure: THEOCHEM-Theory and Molecular Modeling
in Chemistry, 419: 213-220.
Sclove, S.L. and Sherman S.A. (1997) A priori and a posterior
mixture distributions for dihedral angles of amino acid residues
in proteins. Journal of Molecular Structure: THEOCHEM-Theory and
Molecular Modeling in Chemistry, 419: 245-255.
Finch, A.M., Vogen, S.M., Sherman, S.A., Kirnarsky, L., Taylor,
S.M., and Sanderson, S.D. (1997) Biologically active conformer
of the effector region of human C5a and modulatory effects of N-terminal
receptor binding determinants on activity. J. Med. Chem., 40: 877-884.
Ruddon, R.W., Sherman, S.A., and Bedows, E. (1996) Protein Folding
in the Endoplasmic Reticulum: Lessons from the Human Chorionic
Gonadotropin _ Subunit. Protein Science, 5: 1443-1452.
Sherman, S., Sclove, S., Kirnarsky, L., Tomchin, I., and Shats,
O. (1996) Improvement in Accuracy of Protein Local Structure Determination
from NMR Data. Journal of Molecular Structure: THEOCHEM-Theory
and Molecular Modeling in Chemistry, 368: 153-161.
Sherman, S.A., Gmeiner, W.H., Kirnarsky, L., Perini, F., and Ruddon.
R.W. (1995) A linear 23-residue peptide reveals a propensity to
form an unusual native-like conformation. J. Biomol. Struct. Dyn.,
12: 441-446.
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