Jia, S., Li, A., Morton, K., Avoles-Kianian, P., Kianian, S.F., Zhang, C., and Holding, D.R. (2016)
A Population of Deletion Mutants and an Integrated Mapping and Exome-seq Pipeline for Gene Discovery in Maize. G3: Genes, Genomes and Genetics. g3.116.030528; Early Online June 3, 2016, doi:10.1534/g3.116.030528.
Gelli, M., Mitchell, S.E., Liu, K., Clemente, T.E., Weeks, D.P., Zhang, C., Holding, D.R., and Dweikat, I.M. (2016) Mapping QTLs and association of differentially expressed gene transcripts for multiple agronomic traits under different nitrogen levels in sorghum. BMC Plant Biology. doi: 10.1186/s12870-015-0696-x
Morton, K., Jia, S., Zhang, C., and Holding, D.R. (2015) Proteomic profiling of maize opaque endosperm mutants reveals selective accumulation of lysine-enriched proteins. Journal of Experimental Botany. doi: 10.1093/jxb/erv532
Dou, Y., Guo, X., Yuan, L., Holding, D.R., and Zhang, C. (2015) Differential Expression Analysis in RNA-Seq by a Naive Bayes Classifier with Local Normalization. BioMed Research International Article ID 789516, doi:10.1155/2015/789516
Holding, D.R. (2014) Recent advances in the study of prolamin storage protein organization and function. Front. Plant Sci. 5:276. doi: 10.3389/fpls.2014.00276
Gelli, M., Duo, Y., Konda, A.R., Zhang, C., Holding, D.R., and Dweikat, I. (2014) Identification of differentially expressed genes between sorghum genotypes with contrasting nitrogen stress tolerance by genome-wide transcriptional profiling. BMC Genomics. 15: 179.
Yuan, L., Dou, Y., Kianian, S., Zhang, C. and Holding, D.R. (2014) Deletion mutagenesis identifies a haploinsufficient role for gamma-zein in opaque-2 endosperm modification. Plant Physiol. 164: 119-130.
Holding, D.R., and Messing, J. (2013) Evolution, Structure, and Function of Prolamin Storage Proteins, in: P. Becraft (Ed.), Seed Genomics, John Wiley & Sons, New York. pp. 139-158.
Wu, Y., .Yuan, L, Guo, X, Holding, D.R. and Messing, J. (2013).
Mutation in the seed storage protein kafirin creates a high-value food trait in sorghum. Nature Communications, Volume 4, Published 8-16-2013.
Guo, X., Yuan, L., Chen, H., Sato, S.J., Clemente, T.E, and Holding, D.R. (2013).
Nonredundant Function of Zeins and Their Correct Stoichiometric Ratio Drive Protein Body Formation in Maize Endosperm. Plant Physiol. 162: 1359-1369.
Holding, D. and Streich, A. (2013)
Plant growth processes: Transpiration, photosynthesis, and respiration. Nebraska Extension Circular 1268.
Guo, X. , Ronhovde, K., Yuan, L., Yao, B., Soundararajan, M., Elthon, T., Zhang, C., and Holding, D. (2012)
Pyrophosphate dependent fructose-6-phosphate 1-phosphotransferase induction and attenuation of Hsp gene expression during endosperm modification in Quality Protein Maize. Plant Physiology 158: 917-929.
Holding, D.R., Hunter, B.G., Klingler, J.P., Wu, S., Guo, X., Gibbon, B.C., Wu, R., Schulze, J., Jung, R., and Larkins, B.A. (2011) Characterization of opaque2 modifier QTLs and candidate genes in recombinant inbred lines derived from the K0326Y Quality Protein Maize inbred. Theoretical and Applied Genetics 122, 783-794.
Reyes, F.C., Chung, T., Holding, D., Jung, R., Vierstra, R., and Otegui, M.S. (2011). Delivery of Prolamins to the Protein Storage Vacuole in Maize Aleurone Cells, The Plant Cell 23, 769-784.
Holding, D.R., Meeley, R.B., Hazebroek, J., Selinger, D, Jung, R. and Larkins, B.A. (2010) Identification and characterization of the maizearogenate dehydrogenase gene family, Journal of Experimental Botany 61: 3663-3673.
Wu, R., Holding, D.R., and Messing, J. (2010) Gamma zeins are essential for endosperm modification in Quality Protein Maize. Proceedings of the National Academy of Sciences, USA. 107: 12,810-12,815.
Holding, D.R. and Larkins, B. A. (2009) Zein storage proteins, Chapter V: Molecular Biology and Physical Studies, in Molecular Genetic Approaches to Maize Improvement, (A.L. Kriz and B.A. Larkins eds.) pp 269-286. Springer-Verlag Publishers, Heidelberg, Germany.
Holding, D.R., Hunter, B.G., Chung, T., Gibbon, B.C., Ford, C.F., Bharti, A.K., Messing, J., Hamaker, B.R. and Larkins, B.A. (2008) Genetic Analysis of opaque2 Modifier Loci in Quality Protein Maize. Theoretical and applied genetics 117: 157-170.
Holding, D.R. and Larkins, B.A. (2008) Genetic Modification of Seed Storage Proteins. In Advances in Plant Biochemistry and Molecular Biology (Lewis, N.G., Ed.-in-chief) Vol. 1, Bioengineering and Molecular Biology of Plant Pathways (Bohnert, H.J. and Nguyen, H.T, eds.), pp. 107-133. Elsevier Publishers, Oxford, UK.
Holding, D.R, Otegui, M.S., Li, B., Meeley, R.B., Hunter, B.G., Jung. R. and Larkins, B.A. (2007) The maize Floury1 gene encodes a novel ER protein involved in zein protein-body formation. Plant Cell 19:2569-2582.
Settles, M., Holding, D., Tan, B.C. Latshaw, S., Susuki, M, O?Brien, B., Fajardo, D., Wroclwaska, E., Lai, J., Hunter, C., Avigne, W., Peacock, S., Baier, J., Lonon, D., Messing, J., Hannah, L.C., Koch, K., Becraft, P., Larkins, B., and McCarty, D. (2007) Maize Sequence Indexed Knockouts using the UniformMu Transposon Tagging Population. (2007) BMC Genomics, 8:116.
Holding, D.R. and Larkins, B.A. (2006) The development and importance of zein protein bodies in maize endosperm. Maydica 51 (2): 243-254.
Lopez-Valenzuela, J.A., Gibbon, B.C., Holding, D.R., and Larkins, B.A. (2004) Cytoskeletal proteins are coordinately increased in maize genotypes with high levels of eEF1A. Plant Physiology 135: 1784-1797.
Holding, D.R. and Springer, P.S. (2002) The VASCULAR PREPATTERN enhancer trap marks early vascular development in Arabidopsis. Genesis 33 (4): 155-159 2002.
Holding, D.R. and Springer, P.S. (2002) The Arabidopsis gene PROLIFERA is expressed at all stages of reproductive development and is required for cytokinesis. Planta, 214 373-382.
Springer, P.S., Holding. D.R., Groover, A., Yordan, C. and Martienssen, R.A. (2000) The essential Mcm7 protein PROLIFERA is localized to the nucleus of dividing cells during the G1 phase and is required maternally for early Arabidopsis development. Development 127, 1815-1822.
Holding, D.R., Springer, P.S. and Coomber, S.A. (2000) The chloroplast and leaf developmental mutant, pale cress, exhibits light-conditional severity and symptoms characteristic of its ABA deficiency. Annals of Botany. 86, 953-962.
Holding, D.R., McKenzie, R.J. and Coomber, S.A. (1994). Genetic and Structural analysis of five mutants with abnormal root morphology generated by the seed transformation method. Annals of Botany 74, 193-204.