Publications

2023 Publications

Faculty: 1. Edgar Cahoon, 2. James Van Etten, 3.Heriberto Cerutti, 4. Yufeng Ge, 5. Katarzyna Glowacka, 6. David Holding, 7. David Hyten, 8. Saet-Byul Kim 9. Marc Libault, 10. Jennifer Markam, 11.Jeff Mower, 12. Estsuko Moryiama, 13.Toshihiro Obata, 14. Clemencia Rojas 15. Rebecca Roston, 16. Sabrina Russo, 17. Daniel Schachtman, 18. James Schnable, 19. Harkamal Walia, 20.  Jinliang Yang, 21.Bin Yu, 22. Lirong Zeng, 23.Chi Zhang

  1. Bacher, H., A. Montagu, I. Herrmann, H. Walia, N. Schwartz and Z. Peleg (2023). "Stress-induced deeper rooting introgression enhances wheat yield under terminal drought." Journal of Experimental Botany 74(16): 4862-4874.
  2. Bai, F., Q. Du, Q. Zou, L. Xu, W. Dong, X. Lv, X. Han, H. Zhou, C. Zhang and T. Lu (2023). "The association of blood ctDNA levels to mutations of marker genes in colorectal cancer." Cancer Reports 6(4): e1782.
  3. Bai, G., Y. Ge, B. Leavitt, J. A. Gamon and D. Scoby (2023). "Goniometer in the air: Enabling BRDF measurement of crop canopies using a cable-suspended plant phenotyping platform." Biosystems Engineering 230: 344-360.
  4. Barnes, A. C., J. L. Myers, S. M. Surber, Z. Liang, J. P. Mower, J. C. Schnable and R. L. Roston (2023). "Oligogalactolipid production during cold challenge is conserved in early diverging lineages." Journal of Experimental Botany 74(17): 5405-5417.
  5. Bi, Y., R. M. Yassue, P. Paul, B. K. Dhatt, J. Sandhu, P. T. Do, H. Walia, T. Obata and G. Morota (2023). "Evaluating metabolic and genomic data for predicting grain traits under high night temperature stress in rice." G3 Genes|Genomes|Genetics 13(5).
  6. Blume, R. Y., R. Kalendar, L. Guo, E. B. Cahoon and Y. B. Blume (2023). "Overcoming genetic paucity of Camelina sativa: possibilities for interspecific hybridization conditioned by the genus evolution pathway." Front Plant Sci 14: 1259431.
  7. Chai, Y. N., Y. Qi, E. Goren, D. Chiniquy, A. M. Sheflin, S. G. Tringe, J. E. Prenni, P. Liu and D. P. Schachtman "Root-associated bacterial communities and root metabolite composition are linked to nitrogen use efficiency in sorghum." mSystems 0(0): e01190-01123.
  8. Chamara, N., G. Bai and Y. Ge (2023). "AICropCAM: Deploying classification, segmentation, detection, and counting deep-learning models for crop monitoring on the edge." Computers and Electronics in Agriculture 215: 108420.
  9. Chen, J., Z. Wang, K. Tan, W. Huang, J. Shi, T. Li, J. Hu, K. Wang, C. Wang, B. Xin, H. Zhao, W. Song, M. B. Hufford, J. C. Schnable, W. Jin and J. Lai (2023). "A complete telomere-to-telomere assembly of the maize genome." Nature Genetics 55(7): 1221-1231.
  10. Delavaux, C. S., J. A. LaManna, J. A. Myers, R. P. Phillips, S. Aguilar, D. Allen, A. Alonso, K. J. Anderson-Teixeira, M. E. Baker, J. L. Baltzer, P. Bissiengou, M. Bonfim, N. A. Bourg, W. Y. Brockelman, D. F. R. P. Burslem, L.-W. Chang, Y. Chen, J.-M. Chiang, C. Chu, K. Clay, S. Cordell, M. Cortese, J. den Ouden, C. Dick, S. Ediriweera, E. C. Ellis, A. Feistner, A. L. Freestone, T. Giambelluca, C. P. Giardina, G. S. Gilbert, F. He, J. Holík, R. W. Howe, W. Huaraca Huasca, S. P. Hubbell, F. Inman, P. A. Jansen, D. J. Johnson, K. Kral, A. J. Larson, C. M. Litton, J. A. Lutz, Y. Malhi, K. McGuire, S. M. McMahon, W. J. McShea, H. Memiaghe, A. Nathalang, N. Norden, V. Novotny, M. J. O’Brien, D. A. Orwig, R. Ostertag, G. G. Parker, R. Pérez, G. Reynolds, S. E. Russo, L. Sack, P. Šamonil, I. F. Sun, M. E. Swanson, J. Thompson, M. Uriarte, J. Vandermeer, X. Wang, I. Ware, G. D. Weiblen, A. Wolf, S.-H. Wu, J. K. Zimmerman, T. Lauber, D. S. Maynard, T. W. Crowther and C. Averill (2023). "Mycorrhizal feedbacks influence global forest structure and diversity." Communications Biology 6(1): 1066.
  11. DeLong, J. P., J. L. Van Etten and D. D. Dunigan (2023). "Lessons from Chloroviruses: the Complex and Diverse Roles of Viruses in Food Webs." J Virol 97(5): e0027523.
  12. DeLong, J. P., J. L. Van Etten, Z. Al-Ameeli, I. V. Agarkova and D. D. Dunigan (2023). "The consumption of viruses returns energy to food chains." Proc Natl Acad Sci U S A 120(1): e2215000120.
  13. Deng, M., H. Chen, W. Zhang, E. B. Cahoon, Y. Zhou and C. Zhang (2023). "Genetic improvement of tocotrienol content enhances the oxidative stability of canola oil." Frontiers in Plant Science 14.
  14. Díaz-Martínez, V., J. Orozco-Sandoval, V. Manian, B. K. Dhatt and H. Walia (2023). "A Deep Learning Framework for Processing and Classification of Hyperspectral Rice Seed Images Grown under High Day and Night Temperatures." Sensors 23(9): 4370.
  15. Drury, S., G. Claussen, A. Zetterman, H. Moriyama, E. N. Moriyama and L. Zhang (2023). "Evolution and emergence of primate-specific interferon regulatory factor 9." Journal of Medical Virology 95(2): e28521.
  16. Dunigan, D. D., I. V. Agarkova, A. Esmael, S. Alvarez and J. L. Van Etten (2023). "Early-Phase Drive to the Precursor Pool: Chloroviruses Dive into the Deep End of Nucleotide Metabolism." Viruses 15(4).
  17. Engel, A. J., S. Paech, M. Langhans, J. L. van Etten, A. Moroni, G. Thiel and O. Rauh (2023). "Combination of hydrophobicity and codon usage bias determines sorting of model K(+) channel protein to either mitochondria or endoplasmic reticulum." Traffic 24(11): 533-545.
  18. Esmael, A., I. V. Agarkova, D. D. Dunigan, Y. Zhou and J. L. Van Etten (2023). "Viral DNA Accumulation Regulates Replication Efficiency of Chlorovirus OSy-NE5 in Two Closely Related Chlorella variabilis Strains." Viruses 15(6).
  19. Fields, J., A. M. Saxton, C. A. Beyl, D. A. Kopsell, P. B. Cregan, D. L. Hyten, I. Cuvaca and V. R. Pantalone (2023). "Seed Protein and Oil QTL in a Prominent Glycine max Genetic Pedigree: Enhancing Stability for Marker Assisted Selection." Agronomy 13(2): 567.
  20. Gaillard, M., B. Benes, M. C. Tross and J. C. Schnable (2023). "Multi-view triangulation without correspondences." Computers and Electronics in Agriculture 206: 107688.
  21. Gamon, J. A., R. Wang and S. E. Russo (2023). "Contrasting photoprotective responses of forest trees revealed using PRI light responses sampled with airborne imaging spectrometry." New Phytologist 238(3): 1318-1332.
  22. Gao, H., A. J. McCormick, R. L. Roston and Y. Lu (2023). "Editorial: Structure and function of chloroplasts, Volume III." Frontiers in Plant Science 14.
  23. Głowacka, K., J. Kromdijk, C. E. Salesse-Smith, C. Smith, S. M. Driever and S. P. Long (2023). "Is chloroplast size optimal for photosynthetic efficiency?" New Phytologist 239(6): 2197-2211.
  24. Grzybowski, M. W., R. V. Mural, G. Xu, J. Turkus, J. Yang and J. C. Schnable (2023). "A common resequencing-based genetic marker data set for global maize diversity." The Plant Journal 113(6): 1109-1121.
  25. Hao, J., Y. Yang, S. Futrell, E. A. Kelly, C. M. Lorts, B. Nebie, S. Runo, J. Yang, S. Alvarez, J. R. Lasky and D. P. Schachtman (2023). "CRISPR/Cas9-Mediated Mutagenesis of Carotenoid Cleavage Dioxygenase (CCD) Genes in Sorghum Alters Strigolactone Biosynthesis and Plant Biotic Interactions." Phytobiomes Journal 7(3): 339-351.
  26. Harrold, A., A. Cruikshank, B. Penas and R. L. Roston (2023). "Introducing high school biology students to biochemistry with a short, content-oriented module." Biochemistry and Molecular Biology Education 51(6): 685-690.
  27. Hartwig, T., M. Banf, G. P. Prietsch, J.-Y. Zhu, I. Mora-Ramírez, J. H. M. Schippers, S. J. Snodgrass, A. S. Seetharam, B. Huettel, J. M. Kolkman, J. Yang, J. Engelhorn and Z.-Y. Wang (2023). "Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize." Genome Biology 24(1): 108.
  28. Ho, H. V. N., D. D. Dunigan, M. E. Salsbery, I. V. Agarkova, Z. Al Ameeli, J. L. Van Etten and J. P. DeLong (2023). "Viral Chemotaxis of Paramecium Bursaria Altered by Algal Endosymbionts." Microb Ecol 86(4): 2904-2909.
  29. Huanca-Nuñez, N., R. L. Chazdon and S. E. Russo (2023). "Effects of large mammal exclusion on seedling communities depend on plant species traits and landscape protection in human-modified Costa Rican forests." Journal of Applied Ecology 60(12): 2561-2572.
  30. Huang, F., P. Chen, X. Tang, T. Zhong, T. Yang, C. C. Nwafor, C. Yang, X. Ge, H. An and Z. Li (2023). "Genome assembly of the Brassicaceae diploid Orychophragmus violaceus reveals complex whole-genome duplication and evolution of dihydroxy fatty acid metabolism." Plant Communications 4(2).
  31. Huerter, B. G., K. C. Johnson, B. G. Coutu, B. Thedinger, N. R. Bennion, C. Zheng and C. Zhang (2023). "COX inhibitor use during definitive radiotherapy is associated with worse hearing preservation in patients with vestibular schwannoma." Journal of Neuro-Oncology 165(1): 139-148.
  32. Hurst, J. P., A. Yobi, A. Li, S. Sato, T. E. Clemente, R. Angelovici and D. R. Holding (2023). "Large and stable genome edits at the sorghum alpha kafirin locus result in changes in chromatin accessibility and globally increased expression of genes encoding lysine enrichment." Frontiers in Plant Science 14.
  33. Hurst, J. P., S. Sato, T. Ferris, A. Yobi, Y. Zhou, R. Angelovici, T. E. Clemente and D. R. Holding (2023). "Editing the 19 kDa alpha-zein gene family generates non-opaque2-based quality protein maize." Plant Biotechnology Journal n/a(n/a).
  34. Jin, X., H. Du, C. Zhu, H. Wan, F. Liu, J. Ruan, J. P. Mower and A. Zhu (2023). "Haplotype-resolved genomes of wild octoploid progenitors illuminate genomic diversifications from wild relatives to cultivated strawberry." Nature Plants 9(8): 1252-1266.
  35. Katimbo, A., D. R. Rudnick, J. Zhang, Y. Ge, K. C. DeJonge, T. E. Franz, Y. Shi, W.-z. Liang, X. Qiao, D. M. Heeren, I. Kabenge, H. N. Nakabuye and J. Duan (2023). "Evaluation of artificial intelligence algorithms with sensor data assimilation in estimating crop evapotranspiration and crop water stress index for irrigation water management." Smart Agricultural Technology 4: 100176.
  36. Kick, D. R., J. G. Wallace, J. C. Schnable, J. M. Kolkman, B. Alaca, T. M. Beissinger, J. Edwards, D. Ertl, S. Flint-Garcia, J. L. Gage, C. N. Hirsch, J. E. Knoll, N. de Leon, D. C. Lima, D. E. Moreta, M. P. Singh, A. Thompson, T. Weldekidan and J. D. Washburn (2023). "Yield prediction through integration of genetic, environment, and management data through deep learning." G3 Genes|Genomes|Genetics 13(4).
  37. Konda, A. R., M. Gelli, C. Pedersen, R. E. Cahoon, C. Zhang, T. Obata and E. B. Cahoon (2023). "Vitamin E biofortification: Maximizing oilseed tocotrienol and total vitamin E tocochromanol production by use of metabolic bypass combinations." Metabolic Engineering 79: 66-77.
  38. Kudo, Y., K. Umemoto, T. Obata, A. Kaneda, S.-r. Ni, M. Mikage, Y. Sasaki and H. Ando (2023). "Seasonal variation of alkaloids and polyphenol in Ephedra sinica cultivated in Japan and controlling factors." Journal of Natural Medicines 77(1): 137-151.
  39. Lewis, G. L., R. J. Fenton, E. N. Moriyama, J. D. Loy and R. A. Moxley (2023). "Association of ISVsa3 with Multidrug Resistance in Salmonella enterica Isolates from Cattle (Bos taurus)." Microorganisms 11(3): 631.
  40. Li, D., D. Bai, Y. Tian, Y.-H. Li, C. Zhao, Q. Wang, S. Guo, Y. Gu, X. Luan, R. Wang, J. Yang, M. J. Hawkesford, J. C. Schnable, X. Jin and L.-J. Qiu (2023). "Time series canopy phenotyping enables the identification of genetic variants controlling dynamic phenotypes in soybean." Journal of Integrative Plant Biology 65(1): 117-132.
  41. Li, J., N. K. Wijewardane, Y. Ge and Y. Shi (2023). "Improved chlorophyll and water content estimations at leaf level with a hybrid radiative transfer and machine learning model." Computers and Electronics in Agriculture 206: 107669.
  42. Li, J., Y. Su, C. A. Shapiro, D. P. Schachtman and X. Wang (2023). "Phosphate deficiency modifies lipid composition and seed oil production in camelina." Plant Science 330: 111636.
  43. Li, Y., E. J. Kim, A. Voshall, E. N. Moriyama and H. Cerutti (2023). "Small RNAs >26 nt in length associate with AGO1 and are upregulated by nutrient deprivation in the alga Chlamydomonas." Plant Cell 35(6): 1868-1887.
  44. Li, Y., X. Zhan, S. Liu, H. Lu, R. Jiang, W. Guo, S. Chapman, Y. Ge, B. Solan, Y. Ding and F. Baret (2023). "Self-Supervised Plant Phenotyping by Combining Domain Adaptation with 3D Plant Model Simulations: Application to Wheat Leaf Counting at Seedling Stage." Plant Phenomics 5: 0041.
  45. Liang, H., J. P. Mower and C. P. Chia (2023). "Functional Prokaryotic-Like Deoxycytidine Triphosphate Deaminases and Thymidylate Synthase in Eukaryotic Social Amoebae: Vertical, Endosymbiotic, or Horizontal Gene Transfer?" Molecular Biology and Evolution 40(12).
  46. Liang, S., C. Zhang and M. Zhu (2023). "Ab Initio Prediction of 3-D Conformations for Protein Long Loops with High Accuracy and Applications to Antibody CDRH3 Modeling." Journal of Chemical Information and Modeling 63(23): 7568-7577.
  47. Liang, W.-z., J. Oboamah, X. Qiao, Y. Ge, B. Harveson, D. R. Rudnick, J. Wang, H. Yang and A. Gradiz (2023). "CanopyCAM – an edge-computing sensing unit for continuous measurement of canopy cover percentage of dry edible beans." Computers and Electronics in Agriculture 204: 107498.
  48. Liang, Z., X. Meng and J. C. Schnable (2023). A Transferable Machine Learning Framework for Predicting Transcriptional Responses of Genes Across Species. Plant Gene Regulatory Networks: Methods and Protocols. K. Kaufmann and K. Vandepoele. New York, NY, Springer US: 361-379.
  49. Lievens, E. J. P., I. V. Agarkova, D. D. Dunigan, J. L. Van Etten and L. Becks (2023). "Efficient assays to quantify the life history traits of algal viruses." Appl Environ Microbiol 89(12): e0165923.
  50. Lima, D. C., A. C. Aviles, R. T. Alpers, B. A. McFarland, S. Kaeppler, D. Ertl, M. C. Romay, J. L. Gage, J. Holland, T. Beissinger, M. Bohn, E. Buckler, J. Edwards, S. Flint-Garcia, C. N. Hirsch, E. Hood, D. C. Hooker, J. E. Knoll, J. M. Kolkman, S. Liu, J. McKay, R. Minyo, D. E. Moreta, S. C. Murray, R. Nelson, J. C. Schnable, R. S. Sekhon, M. P. Singh, P. Thomison, A. Thompson, M. Tuinstra, J. Wallace, J. D. Washburn, T. Weldekidan, R. J. Wisser, W. Xu and N. de Leon (2023). "2018–2019 field seasons of the Maize Genomes to Fields (G2F) G x E project." BMC Genomic Data 24(1): 29.
  51. Lima, D. C., J. D. Washburn, J. I. Varela, Q. Chen, J. L. Gage, M. C. Romay, J. Holland, D. Ertl, M. Lopez-Cruz, F. M. Aguate, G. de los Campos, S. Kaeppler, T. Beissinger, M. Bohn, E. Buckler, J. Edwards, S. Flint-Garcia, M. A. Gore, C. N. Hirsch, J. E. Knoll, J. McKay, R. Minyo, S. C. Murray, O. A. Ortez, J. C. Schnable, R. S. Sekhon, M. P. Singh, E. E. Sparks, A. Thompson, M. Tuinstra, J. Wallace, T. Weldekidan, W. Xu and N. de Leon (2023). "Genomes to Fields 2022 Maize genotype by Environment Prediction Competition." BMC Research Notes 16(1): 148.
  52. Liu, P., T. Xie, X. Wu, G. Han, S. D. Gupta, Z. Zhang, J. Yue, F. Dong, K. Gable, S. Niranjanakumari, W. Li, L. Wang, W. Liu, R. Yao, E. B. Cahoon, T. M. Dunn and X. Gong (2023). "Mechanism of sphingolipid homeostasis revealed by structural analysis of <i>Arabidopsis</i> SPT-ORM1 complex." Science Advances 9(13): eadg0728.
  53. Lopes, L. D. and D. P. Schachtman (2023). "Rhizosphere and bulk soil bacterial community succession is influenced more by changes in soil properties than in rhizosphere metabolites across a maize growing season." Applied Soil Ecology 189: 104960.
  54. Lopes, L. D., S. L. Futrell, E. Bergmeyer, J. Hao and D. P. Schachtman (2023). "Root exudate concentrations of indole-3-acetic acid (IAA) and abscisic acid (ABA) affect maize rhizobacterial communities at specific developmental stages." FEMS Microbiology Ecology 99(3).
  55. Lopes, L. D., S. L. Futrell, E. E. Wright, G. J. Danalatos, M. J. Castellano, T. J. Vyn, S. V. Archontoulis and D. P. Schachtman (2023). "Soil depth and geographic distance modulate bacterial β-diversity in deep soil profiles throughout the U.S. Corn Belt." Molecular Ecology 32(13): 3718-3732.
  56. McNichol, B. H. and S. E. Russo (2023). "Plant Species&rsquo; Capacity for Range Shifts at the Habitat and Geographic Scales: A Trade-Off-Based Framework." Plants 12(6): 1248.
  57. Murad, M. O. F., J. Ackerson, C. Tolles, K. Meissner, C. L. S. Morgan and Y. Ge (2023). "Estimating soil organic carbon content at variable moisture contents using a low-cost spectrometer." Geoderma 440: 116723.
  58. Nan, Y., H. Zhang, J. Zheng, K. Yang and Y. Ge (2023). "Low-volume precision spray for plant pest control using profile variable rate spraying and ultrasonic detection." Frontiers in Plant Science 13.
  59. Nan, Y., H. Zhang, Y. Zeng, J. Zheng and Y. Ge (2023). "Faster and accurate green pepper detection using NSGA-II-based pruned YOLOv5l in the field environment." Computers and Electronics in Agriculture 205: 107563.
  60. Nan, Y., H. Zhang, Y. Zeng, J. Zheng and Y. Ge (2023). "Intelligent detection of Multi-Class pitaya fruits in target picking row based on WGB-YOLO network." Computers and Electronics in Agriculture 208: 107780.
  61. Nolasco, E., I. Krassovskaya, K. Hong, K. Hansen, S. Alvarez, T. Obata and K. Majumder (2023). "Sprouting alters metabolite and peptide contents in the gastrointestinal digest of soybean and enhances in-vitro anti-inflammatory activity." Journal of Functional Foods 109: 105780.
  62. Obata, T., J. Omini, T. Dele-Osibanjo and I. Krassovskaya (2023). "Malate dehydrogenase-citrate synthase multienzyme complex formation is associated with the pH changes in the mitochondrial matrix in living yeast cells." Journal of Biological Chemistry 299(3): S340-S341.
  63. Orozco, J., V. Manian, E. Alfaro, H. Walia and B. K. Dhatt (2023). "Graph Convolutional Network Using Adaptive Neighborhood Laplacian Matrix for Hyperspectral Images with Application to Rice Seed Image Classification." Sensors 23(7): 3515.
  64. Ozturk, O. K., A. M. Salgado, D. R. Holding, O. H. Campanella and B. R. Hamaker (2023). "Dispersion of zein into pea protein with alkaline agents imparts cohesive and viscoelastic properties for plant-based food analogues." Food Hydrocolloids 134: 108044.
  65. Palali Delen, S., G. Xu, J. Velazquez-Perfecto and J. Yang (2023). "Estimating the genetic parameters of yield-related traits under different nitrogen conditions in maize." Genetics 223(4).
  66. Palali Delen, S., J. Lee and J. Yang (2023). "Improving the metal composition of plants for reduced Cd and increased Zn content: molecular mechanisms and genetic regulations." Cereal Research Communications.
  67. Qiao, Z., E. Barnes, S. Tringe, D. P. Schachtman and P. Liu (2022). "Poisson hurdle model-based method for clustering microbiome features." Bioinformatics 39(1).
  68. Quattrone, A., M. Lopez-Guerrero, P. Yadav, M. A. Meier, S. E. Russo and K. A. Weber (2024). "Interactions between root hairs and the soil microbial community affect the growth of maize seedlings." Plant, Cell & Environment 47(2): 611-628.
  69. Quattrone, A., Y. Yang, P. Yadav, K. A. Weber and S. E. Russo (2023). "Nutrient and Microbiome-Mediated Plant&ndash;Soil Feedback in Domesticated and Wild Andropogoneae: Implications for Agroecosystems." Microorganisms 11(12): 2978.
  70. Quiñones, C., M. A. Adviento-Borbe, W. Larazo, R. S. Harris, K. Mendez, S. S. Cunningham, Z. C. Campbell, K. Medina-Jimenez, N. T. Hein, D. Wagner, B. Ottis, H. Walia and A. Lorence (2023). "Field-based infrastructure and cyber–physical system for the study of high night air temperature stress in irrigated rice." The Plant Phenome Journal 6(1): e20085.
  71. Rodrigues de Queiroz, A., C. Hines, J. Brown, S. Sahay, J. Vijayan, J. M. Stone, N. Bickford, M. Wuellner, K. Glowacka, N. R. Buan and R. L. Roston (2023). "The effects of exogenously applied antioxidants on plant growth and resilience." Phytochemistry Reviews 22(2): 407-447.
  72. Sahay, S., M. Grzybowski, J. C. Schnable and K. Głowacka (2023). "Genetic control of photoprotection and photosystem II operating efficiency in plants." New Phytologist 239(3): 1068-1082.
  73. Saucedo-García, M., A. González-Solís, P. Rodríguez-Mejía, G. Lozano-Rosas, T. d. J. Olivera-Flores, L. Carmona-Salazar, A. A. Guevara-García, E. B. Cahoon and M. Gavilanes-Ruíz (2023). "Sphingolipid Long-Chain Base Signaling in Compatible and Non-Compatible Plant&ndash;Pathogen Interactions in Arabidopsis." International Journal of Molecular Sciences 24(5): 4384.
  74. Shi, Y., H. Tang, M. J. Baine, M. A. Hollingsworth, H. Du, D. Zheng, C. Zhang and H. Yu (2023). "3DGAUnet: 3D Generative Adversarial Networks with a 3D U-Net Based Generator to Achieve the Accurate and Effective Synthesis of Clinical Tumor Image Data for Pancreatic Cancer." Cancers 15(23): 5496.
  75. Shi, Y., W. Yang, H. Lin, L. Han, A. J. Cai, R. Saraf, Y. Lei and C. Zhang (2024). "Identification of RNA-based cell-type markers for stem-cell manufacturing systems with a statistical scoring function." Gene Reports 34: 101869.
  76. Sun, G., H. Yu, P. Wang, M. Lopez-Guerrero, R. V. Mural, O. N. Mizero, M. Grzybowski, B. Song, K. van Dijk, D. P. Schachtman, C. Zhang and J. C. Schnable (2023). "A role for heritable transcriptomic variation in maize adaptation to temperate environments." Genome Biology 24(1): 55.
  77. Sun, S., B. Wang, C. Li, G. Xu, J. Yang, M. B. Hufford, J. Ross-Ibarra, H. Wang and L. Wang (2023). "Unraveling Prevalence and Effects of Deleterious Mutations in Maize Elite Lines across Decades of Modern Breeding." Molecular Biology and Evolution 40(8).
  78. Tian, Q., H. Zhang, L. Bian, L. Zhou and Y. Ge (2024). "Three-Dimensional Quantification and Visualization of Leaf Chlorophyll Content in Poplar Saplings under Drought Using SFM-MVS." Forests 15(1): 20.
  79. Wang, H., B. Campbell, M. Happ, S. McConaughy, A. Lorenz, K. Amundsen, Q. Song, V. Pantalone and D. Hyten (2023). "Development of molecular inversion probes for soybean progeny genomic selection genotyping." The Plant Genome 16(1): e20270.
  80. Wang, O., L. Han, H. Lin, M. Tian, S. Zhang, B. Duan, S. Chung, C. Zhang, X. Lian, Y. Wang and Y. Lei (2023). "Fabricating 3-dimensional human brown adipose microtissues for transplantation studies." Bioactive Materials 22: 518-534.
  81. Wijewardane, N. K., H. Zhang, J. Yang, J. C. Schnable, D. P. Schachtman and Y. Ge (2023). "A leaf-level spectral library to support high-throughput plant phenotyping: predictive accuracy and model transfer." Journal of Experimental Botany 74(14): 4050-4062.
  82. Xie, X., Y. Ge, H. Walia, J. Yang and H. Yu (2023). "Leaf-Counting in Monocot Plants Using Deep Regression Models." Sensors 23(4): 1890.
  83. Xu, J., X. Huang, Y. Guo, X. Ma, P. Li, S. Zhou, C. Zhang, R. Chen, N. Van Halm-Lutterodt and L. Yuan (2023). "Discrepant modulating effects of dietary docosahexaenoic acid on cerebral lipids, fatty acid transporter expression and soluble beta-amyloid levels in ApoE−/− and C57BL/6J mice." Neuropathology and Applied Neurobiology 49(1): e12855.
  84. Yu, R., X. Chen, L. Long, M. Jost, R. Zhao, L. Liu, J. P. Mower, C. W. dePamphilis, S. Wanke and Y. Jiao (2023). "De novo Assembly and Comparative Analyses of Mitochondrial Genomes in Piperales." Genome Biology and Evolution 15(3).
  85. Zhan, Y., R. Zhang, Y. Zhou, V. Stoerger, J. Hiller, T. Awada and Y. Ge (2023). "Rapid online plant leaf area change detection with high-throughput plant image data." Journal of Applied Statistics 50(14): 2984-2998.
  86. Zhang, H., L. Wang, X. Jin, L. Bian and Y. Ge (2023). "High-throughput phenotyping of plant leaf morphological, physiological, and biochemical traits on multiple scales using optical sensing." The Crop Journal 11(5): 1303-1318.
  87. Zhang, K., Y. Yang, X. Zhang, L. Zhang, Y. Fu, Z. Guo, S. Chen, J. Wu, J. C. Schnable, K. Yi, X. Wang and F. Cheng (2023). "The genome of Orychophragmus violaceus provides genomic insights into the evolution of Brassicaceae polyploidization and its distinct traits." Plant communications 4(2): 100431.

2022 Publications

Faculty: 1. Edgar Cahoon, 2. James Van Etten, 3.Heriberto Cerutti, 4. Yufeng Ge, 5. Katarzyna Glowacka, 6. David Holding, 7. David Hyten, 8. Marc Libault, 9. Jennifer Markam, 10.Jeff Mower, 11. Estsuko Moryiama, 12.Toshihiro Obata, 13. Rebecca Roston, 14. Sabrina Russo, 15. Daniel Schachtman, 16. James Schnable, 17. Harkamal Walia,18.  Jinliang Yang, 19.Bin Yu, 20. Lirong Zeng, 21.Chi Zhang

 

  1. Acevedo-Siaca, L. G., K. Glowacka, S. M. Driever, C. E. Salesse-Smith, N. Lugassi, D. Granot, S. P. Long and J. Kromdijk (2022). "Guard-cell-targeted overexpression of Arabidopsis Hexokinase 1 can improve water use efficiency in field-grown tobacco plants." J Exp Bot 73(16): 5745-5757.
  2. Anderson-Teixeira, K. J., V. Herrmann, C. R. Rollinson, B. Gonzalez, E. B. Gonzalez-Akre, N. Pederson, M. R. Alexander, C. D. Allen, R. Alfaro-Sánchez, T. Awada, J. L. Baltzer, P. J. Baker, J. D. Birch, S. Bunyavejchewin, P. Cherubini, S. J. Davies, C. Dow, R. Helcoski, J. Kašpar, J. A. Lutz, E. Q. Margolis, J. T. Maxwell, S. M. McMahon, C. Piponiot, S. E. Russo, P. Šamonil, A. E. Sniderhan, A. J. Tepley, I. Vašíčková, M. Vlam and P. A. Zuidema (2022). "Joint effects of climate, tree size, and year on annual tree growth derived from tree-ring records of ten globally distributed forests." Global Change Biology 28(1): 245-266.
  3. Arias, C. L., T. Quach, T. Huynh, H. Nguyen, A. Moretti, Y. Shi, M. Guo, A. Rasoul, K. Van, L. McHale, T. E. Clemente, A. P. Alonso and C. Zhang (2022). "Expression of AtWRI1 and AtDGAT1 during soybean embryo development influences oil and carbohydrate metabolism." Plant Biotechnology Journal 20(7): 1327-1345.
  4. Bacher, H., Y. Sharaby, H. Walia and Z. Peleg (2021). "Modifying root-to-shoot ratio improves root water influxes in wheat under drought stress." Journal of Experimental Botany 73(5): 1643-1654.
  5. Berry, J. C., M. Qi, B. V. Sonawane, A. Sheflin, A. Cousins, J. Prenni, D. P. Schachtman, P. Liu and R. S. Bart (2022). "Increased signal-to-noise ratios within experimental field trials by regressing spatially distributed soil properties as principal components." Elife 11.
  6. Bhatti, S., D. M. Heeren, S. R. Evett, S. A. O’Shaughnessy, D. R. Rudnick, T. E. Franz, Y. Ge and C. M. Neale (2022). "Crop response to thermal stress without yield loss in irrigated maize and soybean in Nebraska." Agricultural Water Management 274: 107946.
  7. Bian, L., H. Zhang, Y. Ge, J. Čepl, J. Stejskal and Y. A. EL-Kassaby (2022). "Closing the gap between phenotyping and genotyping: review of advanced, image-based phenotyping technologies in forestry." Annals of Forest Science 79(1): 1-21.
  8. Boatwright, J. L., S. Sapkota, H. Jin, J. C. Schnable, Z. Brenton, R. Boyles and S. Kresovich (2022). "Sorghum Association Panel whole-genome sequencing establishes cornerstone resource for dissecting genomic diversity." Plant J 111(3): 888-904.
  9. Busta, L., K. D. Chapman and E. B. Cahoon (2022). "Better together: Protein partnerships for lineage-specific oil accumulation." Curr Opin Plant Biol 66: 102191.
  10. Cao, M., R. Ma, H. Li, J. Cui, C. Zhang and J. Zhao (2022). "Therapy-resistant and -sensitive lncRNAs, SNHG1 and UBL7-AS1 promote glioblastoma cell proliferation." Oxidative Medicine and Cellular Longevity 2022: 2623599.
  11. Cervantes-Perez, S. A. and M. Libault (2022). "Cell-Type-Specific Profiling of the Arabidopsis thaliana Membrane Protein-Encoding Genes." Membranes (Basel) 12(9).
  12. Cervantes-Perez, S. A., S. Thibivilliers, C. Laffont, A. D. Farmer, F. Frugier and M. Libault (2022). "Cell-specific pathways recruited for symbiotic nodulation in the Medicago truncatula legume." Mol Plant 15(12): 1868-1888.
  13. Cervantes-Perez, S. A., S. Thibivillliers, S. Tennant and M. Libault (2022). "Review: Challenges and perspectives in applying single nuclei RNA-seq technology in plant biology." Plant Sci 325: 111486.
  14. Chai, Y. N. and D. P. Schachtman (2022). "Root exudates impact plant performance under abiotic stress." Trends Plant Sci 27(1): 80-91.
  15. Chai, Y. N., S. Futrell and D. P. Schachtman (2022). "Assessment of Bacterial Inoculant Delivery Methods for Cereal Crops." Front Microbiol 13: 791110.
  16. Chamara, N., M. D. Islam, G. F. Bai, Y. Shi and Y. Ge (2022). "Ag-IoT for crop and environment monitoring: Past, present, and future." Agricultural Systems 203: 103497.
  17. Chandran, A. K. N., J. Sandhu, L. Irvin, P. Paul, B. K. Dhatt, W. Hussain, T. Gao, P. Staswick, H. Yu and G. Morota (2022). "Rice Chalky Grain 5 regulates natural variation for grain quality under heat stress." Frontiers in Plant Science 13: 1026472.
  18. Clarke, J. L., Y. Qiu and J. C. Schnable (2022). "Experimental Design for Controlled Environment High-Throughput Plant Phenotyping." Methods Mol Biol 2539: 57-68.
  19. DeLong, J. P., M. A. Al-Sammak, Z. T. Al-Ameeli, D. D. Dunigan, K. F. Edwards, J. J. Fuhrmann, J. P. Gleghorn, H. Li, K. Haramoto, A. O. Harrison, M. F. Marston, R. M. Moore, S. W. Polson, B. D. Ferrell, M. E. Salsbery, C. R. Schvarcz, J. Shirazi, G. F. Steward, J. L. Van Etten and K. E. Wommack (2022). "Towards an integrative view of virus phenotypes." Nat Rev Microbiol 20(2): 83-94.
  20. Demattê, J. A., A. F. d. S. Paiva, R. R. Poppiel, N. A. Rosin, L. F. C. Ruiz, F. A. d. O. Mello, B. Minasny, S. Grunwald, Y. Ge and E. Ben Dor (2022). "The Brazilian S oil S pectral S ervice (BraSpecS): A User-Friendly System for Global Soil Spectra Communication." Remote Sensing 14(3): 740.
  21. Deng, S., M. A. Meier, D. Caddell, J. Yang and D. Coleman-Derr (2022). Plant Microbiome-Based Genome-Wide Association Studies. Genome-Wide Association Studies. D. Torkamaneh and F. Belzile. New York, NY, Springer US: 353-367.
  22. Dharni, J. S., B. K. Dhatt, P. Paul, T. Gao, T. Awada, H. Bacher, Z. Peleg, P. Staswick, J. Hupp, H. Yu and H. Walia (2022). "A non-destructive approach for measuring rice panicle-level photosynthetic responses using 3D-image reconstruction." Plant Methods 18(1): 126.
  23. Dietz, N., Y. O. Chan, A. Scaboo, G. Graef, D. Hyten, M. Happ, B. Diers, A. Lorenz, D. Wang, T. Joshi and K. Bilyeu (2022). "Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution." Front Plant Sci 13: 889066.
  24. Du, Q., M. T. Campbell, H. Yu, K. Liu, H. Walia, Q. Zhang and C. Zhang (2022). Gene Co-expression Network Analysis and Linking Modules to Phenotyping Response in Plants. High-Throughput Plant Phenotyping: Methods and Protocols. A. Lorence and K. Medina Jimenez. New York, NY, Springer US: 261-268.
  25. Fan, W., F. Liu, Q. Jia, H. Du, W. Chen, J. Ruan, J. Lei, D. Z. Li, J. P. Mower and A. Zhu (2022). "Fragaria mitogenomes evolve rapidly in structure but slowly in sequence and incur frequent multinucleotide mutations mediated by microinversions." New Phytol 236(2): 745-759.
  26. Folkerts, C., J. D. Luck, S. K. Pitla and Y. Ge (2022). "Optical Sensor System for Chemical Flow Rate Monitoring with Direct Nozzle Injection." Journal of the ASABE 65(1): 87-95.
  27. Gan, L., K. Park, J. Chai, E. M. Updike, H. Kim, A. Voshall, S. Behera, X. H. Yu, Y. Cai, C. Zhang, M. A. Wilson, J. P. Mower, E. N. Moriyama, C. Zhang, S. Kaewsuwan, Q. Liu, J. Shanklin and E. B. Cahoon (2022). "Divergent evolution of extreme production of variant plant monounsaturated fatty acids." Proc Natl Acad Sci U S A 119(30): e2201160119.
  28. Gonzalez-Akre, E., C. Piponiot, M. Lepore, V. Herrmann, J. A. Lutz, J. L. Baltzer, C. W. Dick, G. S. Gilbert, F. He, M. Heym, A. I. Huerta, P. A. Jansen, D. J. Johnson, N. Knapp, K. Král, D. Lin, Y. Malhi, S. M. McMahon, J. A. Myers, D. Orwig, D. I. Rodríguez-Hernández, S. E. Russo, J. Shue, X. Wang, A. Wolf, T. Yang, S. J. Davies and K. J. Anderson-Teixeira (2022). "allodb: An R package for biomass estimation at globally distributed extratropical forest plots." Methods in Ecology and Evolution 13(2): 330-338.
  29. Han, L., C. P. Jara, O. Wang, Y. Shi, X. Wu, S. Thibivilliers, R. K. Woycicki, M. A. Carlson, W. H. Velander, E. P. Araujo, M. Libault, C. Zhang and Y. Lei (2022). "Isolating and cryopreserving pig skin cells for single-cell RNA sequencing study." PLoS One 17(2): e0263869.
  30. Huang, F., P. Chen, X. Tang, T. Zhong, T. Yang, C. C. Nwafor, C. Yang, X. Ge, H. An, Z. Li, E. B. Cahoon and C. Zhang (2022). "Genome assembly of the Brassicaceae diploid Orychophragmus violaceus reveals complex whole-genome duplication and evolution of dihydroxy fatty acid metabolism." Plant Commun: 100432.
  31. Hyten, D. L. (2022). "Genotyping Platforms for Genome-Wide Association Studies: Options and Practical Considerations." Methods Mol Biol 2481: 29-42.
  32. Katimbo, A., D. R. Rudnick, W.-z. Liang, K. C. DeJonge, T. H. Lo, T. E. Franz, Y. Ge, X. Qiao, I. Kabenge and H. N. Nakabuye (2022). "Two source energy balance maize evapotranspiration estimates using close-canopy mobile infrared sensors and upscaling methods under variable water stress conditions." Agricultural Water Management 274: 107972.
  33. Khan, A. L., A. Al-Harrasi, J. P. Wang, S. Asaf, J. M. Riethoven, T. Shehzad, C. S. Liew, X. M. Song, D. P. Schachtman, C. Liu, J. G. Yu, Z. K. Zhang, F. B. Meng, J. Q. Yuan, C. D. Wei, H. Guo, X. Wang, A. Al-Rawahi, I. J. Lee, J. L. Bennetzen and X. Y. Wang (2022). "Genome structure and evolutionary history of frankincense producing Boswellia sacra." iScience 25(7): 104574.
  34. Khan, A. L., L. D. Lopes, S. Bilal, S. Asaf, K. M. Crawford, V. Balan, A. Al-Rawahi, A. Al-Harrasi and D. P. Schachtman (2022). "Microbiome Variation Across Populations of Desert Halophyte Zygophyllum qatarensis." Front Plant Sci 13: 841217.
  35. Khound, R., G. Sun, R. V. Mural, J. C. Schnable and D. K. Santra (2022). "SNP discovery in proso millet (Panicum miliaceum L.) using low-pass genome sequencing." Plant Direct 6(9): e447.
  36. Kong, Y., M. Kuss, Y. Shi, F. Fang, W. Xue, W. Shi, Y. Liu, C. Zhang, P. Zhong and B. Duan (2022). "Exercise facilitates regeneration after severe nerve transection and further modulates neural plasticity." Brain Behav Immun Health 26: 100556.
  37. Korth, N., L. Parsons, M. J. Van Haute, Q. Yang, P. Hurst, J. C. Schnable, D. R. Holding and A. K. Benson (2022). "The Unique Seed Protein Composition of Quality Protein Popcorn Promotes Growth of Beneficial Bacteria From the Human Gut Microbiome." Front Microbiol 13: 921456.
  38. Li, D., D. Bai, Y. Tian, Y. H. Li, C. Zhao, Q. Wang, S. Guo, Y. Gu, X. Luan, R. Wang, J. Yang, M. J. Hawkesford, J. C. Schnable, X. Jin and L. J. Qiu (2022). "Time series canopy phenotyping enables the identification of genetic variants controlling dynamic phenotypes in soybean." J Integr Plant Biol.
  39. Li, J., D. P. Schachtman, C. F. Creech, L. Wang, Y. Ge and Y. Shi (2022). "Evaluation of UAV-derived multimodal remote sensing data for biomass prediction and drought tolerance assessment in bioenergy sorghum." The Crop Journal 10(5): 1363-1375.
  40. Liao, X., Y. Ye, X. Zhang, D. Peng, M. Hou, G. Fu, J. Tan, J. Zhao, R. Jiang, Y. Xu, J. Liu, J. Yang, W. Liu, L. R. Tembrock, G. Zhu and Z. Wu (2022). "The genomic and bulked segregant analysis of Curcuma alismatifolia revealed its diverse bract pigmentation." aBIOTECH 3(3): 178-196.
  41. Lopes, L. D., P. Wang, S. L. Futrell and D. P. Schachtman (2022). "Sugars and Jasmonic Acid Concentration in Root Exudates Affect Maize Rhizosphere Bacterial Communities." Appl Environ Microbiol 88(18): e0097122.
  42. Lopez-Guerrero, M. G., P. Wang, F. Phares, D. P. Schachtman, S. Alvarez and K. van Dijk (2022). "A glass bead semi-hydroponic system for intact maize root exudate analysis and phenotyping." Plant Methods 18(1): 25.
  43. Maitra, S., M. B. Viswanathan, K. Park, B. Kannan, S. C. Alfanar, S. M. McCoy, E. B. Cahoon, F. Altpeter, A. D. Leakey and V. Singh "Bioprocessing, Recovery, and Mass Balance of Vegetative Lipids from Metabolically Engineered “Oilcane” Demonstrates Its Potential as an Alternative Feedstock for Drop-In Fuel Production." ACS Sustainable Chemistry & Engineering.
  44. Malakar, A., D. D. Snow, M. Kaiser, J. Shields, B. Maharjan, H. Walia, D. Rudnick and C. Ray (2022). "Ferrihydrite enrichment in the rhizosphere of unsaturated soil improves nutrient retention while limiting arsenic and uranium plant uptake." Science of The Total Environment 806: 150967.
  45. Murad, M. O. F., E. J. Jones, B. Minasny, A. B. McBratney, N. Wijewardane and Y. Ge (2022). "Assessing a VisNIR penetrometer system for in-situ estimation of soil organic carbon under variable soil moisture conditions." Biosystems Engineering 224: 197-212.
  46. Mural, R. V. and J. C. Schnable (2022). "Can the grains offer each other helping hands? Convergent molecular mechanisms associated with domestication and crop improvement in rice and maize." Mol Plant 15(5): 793-795.
  47. Mural, R. V., G. Sun, M. Grzybowski, M. C. Tross, H. Jin, C. Smith, L. Newton, C. M. Andorf, M. R. Woodhouse, A. M. Thompson, B. Sigmon and J. C. Schnable (2022). "Association mapping across a multitude of traits collected in diverse environments in maize." Gigascience 11.
  48. Nwafor, C. C., D. Li, P. Qin, L. Li, W. Zhang, Y. Zhou, J. Xu, Y. Yin, J. Cao, L. He, F. Xiang, C. Liu, L. Guo, Y. Zhou, E. B. Cahoon and C. Zhang (2022). "Genetic and Biochemical Investigation of Seed Fatty Acid Accumulation in Arabidopsis." Front Plant Sci 13: 942054.
  49. Omini, J. J., I. Krassovskaya and T. Obata (2022). "Malate Dehydrogenase-Citrate Synthase Multienzyme Complex Dynamics Is Affected By TCA Cycle Flux In Living Yeast Cells." The FASEB Journal 36(S1).
  50. Petro, T.M., Agarkova, I.V., Esmael, A., Dunigan, D.D., Van Etten, J.L., Pattee, G.L. (2022). The chlorovirus types detected in ALS patients through serum antibodies also accelerate motor deterioration in SODG93A transgenic mice. Frontiers in Neurology. 13, 821166.
  51. Qi, M., J. C. Berry, K. W. Veley, L. O'Connor, O. M. Finkel, I. Salas-Gonzalez, M. Kuhs, J. Jupe, E. Holcomb, T. Glavina Del Rio, C. Creech, P. Liu, S. G. Tringe, J. L. Dangl, D. P. Schachtman and R. S. Bart (2022). "Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons." ISME J 16(8): 1957-1969.
  52. Qu, X. J., X. J. Zhang, D. L. Cao, X. X. Guo, J. P. Mower and S. J. Fan (2022). "Plastid and mitochondrial phylogenomics reveal correlated substitution rate variation in Koenigia (Polygonoideae, Polygonaceae) and a reduced plastome for Koenigia delicatula including loss of all ndh genes." Mol Phylogenet Evol 174: 107544.
  53. Rice, S. L., E. Lazarus, C. Anderton, K. Birnbaum, J. Brophy, B. Cole, D. Dickel, D. Ehrhardt, N. Fahlgren, M. Frank, E. Haswell, S. C. Huang, S. Leiboff, M. Libault, M. S. Otegui, N. Provart, R. G. Uhrig, S. Y. Rhee and C. Plant Cell Atlas (2022). "First Plant Cell Atlas symposium report." Plant Direct 6(6): e406.
  54. Rodene, E., G. Xu, S. Palali Delen, X. Zhao, C. Smith, Y. Ge, J. Schnable and J. Yang (2022). "A UAV-based high-throughput phenotyping approach to assess time-series nitrogen responses and identify trait-associated genetic components in maize." The Plant Phenome Journal 5(1): e20030.
  55. Rodrigues, R. A. L., V. F. Queiroz, J. Ghosh, D. D. Dunigan and J. L. Van Etten (2022). "Functional Genomic Analyses Reveal an Open Pan-genome for the Chloroviruses and a Potential for Genetic Innovation in New Isolates." J Virol 96(2): e0136721.
  56. Russell, A. E., T. M. Aide, E. Braker, C. N. Ganong, R. D. Hardin, K. D. Holl, S. C. Hotchkiss, J. A. Klemens, E. K. Kuprewicz, D. McClearn, G. Middendorf, R. Ostertag, J. S. Powers, S. E. Russo, J. L. Stynoski, U. Valdez and C. G. Willis (2022). "Integrating tropical research into biology education is urgently needed." PLOS Biology 20(6): e3001674.
  57. Russo, S. E., G. Ledder, E. B. Muller and R. M. Nisbet (2022). "Dynamic Energy Budget models: fertile ground for understanding resource allocation in plants in a changing world." Conservation Physiology 10(1).
  58. Santos, P., L. Busta, W. C. Yim, E. B. Cahoon and D. K. Kosma (2022). "Structural diversity, biosynthesis, and function of plant falcarin-type polyacetylenic lipids." J Exp Bot 73(9): 2889-2904.
  59. Scott, S., E. B. Cahoon and L. Busta (2022). "Variation on a theme: the structures and biosynthesis of specialized fatty acid natural products in plants." Plant J 111(4): 954-965.
  60. Segnitz, R. M., S. E. Russo and K. G. Peay (2022). "Interactions with soil fungi alter density dependence and neighborhood effects in a locally abundant dipterocarp species." Ecology and Evolution 12(1): e8478.
  61. Shao Q, Agarkova IV, Noel E, Dunigan DD, Liu Y, Wang A, Guo M, Xie L, Zhao X, Rossmann MG, Van Etten JL, Klose T, Fang Q.. (2022) First near-atomic, non icosahedrally averaged, structure of giant viruses and implications for viral assembly. Nature Commun. 13, 6476.
  62. Shepherd, K. D., R. Ferguson, D. Hoover, F. van Egmond, J. Sanderman and Y. Ge (2022). "A global soil spectral calibration library and estimation service." Soil Security 7: 100061.
  63. Singh, J., Y. Ge, D. M. Heeren, E. Walter-Shea, C. M. Neale, S. Irmak and M. S. Maguire (2022). "Unmanned Aerial System-Based Data Ferrying over a Sensor Node Station Network in Maize." Sensors 22(5): 1863.
  64. Speciale, I., A. Notaro, C. Abergel, R. Lanzetta, T. L. Lowary, A. Molinaro, M. Tonetti, J. L. Van Etten and C. De Castro (2022). "The Astounding World of Glycans from Giant Viruses." Chem Rev 122(20): 15717-15766.
  65. Speciale, I., Di Lorenzo, F., Notaro, A., Noel, E., Agarkova, I., Molinaro, A., Van Etten, J.L., De Castro, C. (2022). N-glycan from Paramecium bursaria chlorella virus MA-1D: re-evaluation of the oligosaccharide common core structure. Glycobiology 32, 260 - 273.
  66. Sun, G., N. Wase, S. Shu, J. Jenkins, B. Zhou, J. V. Torres-Rodriguez, C. Chen, L. Sandor, C. Plott, Y. Yoshinga, C. Daum, P. Qi, K. Barry, A. Lipzen, L. Berry, C. Pedersen, T. Gottilla, A. Foltz, H. Yu, R. O'Malley, C. Zhang, K. M. Devos, B. Sigmon, B. Yu, T. Obata, J. Schmutz and J. C. Schnable (2022). "Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass." Nat Commun 13(1): 7731.
  67. Sun, G., R. V. Mural, J. D. Turkus and J. C. Schnable (2022). "Quantitative Resistance Loci to Southern Rust Mapped in a Temperate Maize Diversity Panel." Phytopathology 112(3): 579-587.
  68. Thibivilliers, S., A. Farmer, S. Schroeder and M. Libault (2022). Plant Single-Cell/Nucleus RNA-seq Workflow. Single Cell Transcriptomics: Methods and Protocols, Springer: 165-181.
  69. Viscarra Rossel, R. A., T. Behrens, E. Ben‐Dor, S. Chabrillat, J. A. M. Demattê, Y. Ge, C. Gomez, C. Guerrero, Y. Peng and L. Ramirez‐Lopez (2022). "Diffuse reflectance spectroscopy for estimating soil properties: A technology for the 21st century." European Journal of Soil Science 73(4): e13271.
  70. Wang, C. and L. Zeng (2022). "The Exploitation of Host 26S Proteasome as a New Stratedy for Bacterial Pathogenicity." Frontiers in Plant Science 13.
  71. Wang, H.-L., B.-J. Ding, J.-Q. Dai, T. J. Nazarenus, R. Borges, A. Mafra-Neto, E. B. Cahoon, P. Hofvander, S. Stymne and C. Löfstedt (2022). "Insect pest management with sex pheromone precursors from engineered oilseed plants." Nature Sustainability 5(11): 981-990.
  72. Wang, P., L. D. Lopes, M. G. Lopez-Guerrero, K. van Dijk, S. Alvarez, J.-J. Riethoven and D. P. Schachtman (2022). "Natural variation in root exudation of GABA and DIMBOA impacts the maize root endosphere and rhizosphere microbiomes." Journal of Experimental Botany 73(14): 5052-5066.
  73. Wang, S., K. Guan, C. Zhang, D. Lee, A. J. Margenot, Y. Ge, J. Peng, W. Zhou, Q. Zhou and Y. Huang (2022). "Using soil library hyperspectral reflectance and machine learning to predict soil organic carbon: Assessing potential of airborne and spaceborne optical soil sensing." Remote Sensing of Environment 271: 112914.
  74. Wang, X., J. Wang, H. Cui, W. Yang, B. Yu, C. Zhang, J. Wen, J. Kang, Z. Wang and Q. Yang (2022). "The UDP-glycosyltransferase MtUGT84A1 regulates anthocyanin accumulation and plant growth via JA signaling in Medicago truncatula." Environmental and Experimental Botany 201: 104972.
  75. Wase, N., N. Abshire and T. Obata (2022). High-Throughput Profiling of Metabolic Phenotypes Using High-Resolution GC-MS. High-Throughput Plant Phenotyping: Methods and Protocols. A. Lorence and K. Medina Jimenez. New York, NY, Springer US: 235-260.
  76. Wu, J., S. Wen, Y. Lan, X. Yin, J. Zhang and Y. Ge (2022). "Estimation of cotton canopy parameters based on unmanned aerial vehicle (UAV) oblique photography." Plant Methods 18(1): 129.
  77. Yang, Q., M. Van Haute, N. Korth, S. E. Sattler, J. Toy, D. J. Rose, J. C. Schnable and A. K. Benson (2022). "Genetic analysis of seed traits in Sorghum bicolor that affect the human gut microbiome." Nat Commun 13(1): 5641.
  78. Yang, Z., G. Xu, Q. Zhang, T. Obata and J. Yang (2022). "Genome-wide mediation analysis: an empirical study to connect phenotype with genotype via intermediate transcriptomic data in maize." Genetics 221(2).
  79. Yin, L., G. Xu, J. Yang and M. Zhao (2022). "The Heterogeneity in the Landscape of Gene Dominance in Maize is Accompanied by Unique Chromatin Environments." Molecular Biology and Evolution 39(10).
  80. Yu, R., C. Sun, Y. Zhong, Y. Liu, M. V. Sanchez-Puerta, J. P. Mower and R. Zhou (2022). "The minicircular and extremely heteroplasmic mitogenome of the holoparasitic plant Rhopalocnemis phalloides." Curr Biol 32(2): 470-479 e475.
  81. Zhan, Y., R. Zhang, Y. Zhou, V. Stoerger, J. Hiller, T. Awada and Y. Ge (2022). "Rapid online plant leaf area change detection with high-throughput plant image data." Journal of Applied Statistics: 1-15.
  82. Zhang, H., Y. Ge, X. Xie, A. Atefi, N. K. Wijewardane and S. Thapa (2022). "High throughput analysis of leaf chlorophyll content in sorghum using RGB, hyperspectral, and fluorescence imaging and sensor fusion." Plant Methods 18(1): 1-17.
  83. Zhang, K., Y. Yang, X. Zhang, L. Zhang, Y. Fu, Z. Guo, S. Chen, J. Wu, J. C. Schnable, K. Yi, X. Wang and F. Cheng (2022). "The genome of Orychophragmus violaceus provides genomic insights into the evolution of Brassicaceae polyploidization and its distinct traits." Plant Commun: 100431.